Further to my query, I would like to know how to prepare pdqt file for carbohydrates in Vina-Carb. I am downloading pdb file (heparin tetrasaccharide) from glycam server. Do I need to change the atom types in the pdbqt file to match glycam atom types prior to docking?

Is there an example of docking using Vina-Carb?



-----Original Message-----
From: Neha Gandhi [mailto:[log in to unmask]] 
Sent: Tuesday, 19 September 2017 4:17 PM
To: [log in to unmask]
Cc: Neha S. Gandhi <[log in to unmask]>
Subject: VIna-carb

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Dear List,

I downloaded Vina-carb. I am trying to figure out its installation. Do we simply untar it or we have to compile from the source?

Many thanks,
Neha