I would like to know if it is possible to use the GLYCAM parameters to run MD simulations using MDWeb (http://mmb.irbbarcelona.org/
MDWeb//index.php). I have a protein-polysaccharide complex that I want to simulate using this server and the AMBER-99SB* force field. MDWeb asks a .lib and .frcmod file for my polysaccharide in order to be able to simulate it (http://mmb.irbbarcelona.org/ MDWeb//help.php?id=checkingLig ). However, I'm not sure how I can obtain these files from GLYCAM parameter files.
Any ideia is welcome.