Hello Glycam users,
I am planning to do MD simulation of a protein-ligand complex in which ligand is heparin, made of 2-O-sulfo-aplha-L-iduronic acid and 2-deoxy-2-sulamido-alpha-D-glucopyranosyl-6-O-sulfate. I am using Amber 12 MD package for simulation. It will be of great help if somebody can help me to get the Amber compatible Glycam parameters for heparin.
Many thanks
Anu